Clustergrammer
CFTRCHRNA3CHRNA5FAM13AGATA2HHIPJUNJUNBJUNDMMP12MMP9MYH10PPARGSERPI..TGFBR3TNFGSM1375987.ch1-vs-GSM1375986.ch1GSM1375988.ch1-vs-GSM1375986.ch1GSM1375989.ch1-vs-GSM1375986.ch1GSM1375990.ch1-vs-GSM1375986.ch1GSM1375991.ch1-vs-GSM1375986.ch1GSM1375992.ch1-vs-GSM1375986.ch1GSM1375993.ch1-vs-GSM1375986.ch1GSM1375994.ch1-vs-GSM1375986.ch1GSM1375995.ch1-vs-GSM1375986.ch1GSM1375996.ch1-vs-GSM1375986.ch1GSM1375997.ch1-vs-GSM1375986.ch1GSM1375998.ch1-vs-GSM1375986.ch1GSM1375999.ch1-vs-GSM1375986.ch1GSM1376000.ch1-vs-GSM1375986.ch1GSM1376001.ch1-vs-GSM1375986.ch1GSM1376002.ch1-vs-GSM1375986.ch1GSM1376003.ch1-vs-GSM1375986.ch1GSM1376004.ch1-vs-GSM1375986.ch1GSM1376005.ch1-vs-GSM1375986.ch1GSM1376006.ch1-vs-GSM1375986.ch1GSM1376007.ch1-vs-GSM1375986.ch1GSM1376008.ch1-vs-GSM1375986.ch1GSM1376009.ch1-vs-GSM1375986.ch1GSM1376010.ch1-vs-GSM1375986.ch1GSM1376011.ch1-vs-GSM1375986.ch1GSM1376012.ch1-vs-GSM1375986.ch1GSM1376013.ch1-vs-GSM1375986.ch1GSM1376014.ch1-vs-GSM1375986.ch1GSM1376015.ch1-vs-GSM1375986.ch1GSM1376016.ch1-vs-GSM1375986.ch1GSM1376017.ch1-vs-GSM1375986.ch1GSM1376018.ch1-vs-GSM1375986.ch1GSM1376019.ch1-vs-GSM1375986.ch1GSM1376020.ch1-vs-GSM1375986.ch1GSM1376021.ch1-vs-GSM1375986.ch1GSM1376022.ch1-vs-GSM1375986.ch1GSM1376023.ch1-vs-GSM1375986.ch1GSM1376024.ch1-vs-GSM1375986.ch1GSM1376025.ch1-vs-GSM1375986.ch1GSM1376026.ch1-vs-GSM1375986.ch1GSM1376027.ch1-vs-GSM1375986.ch1GSM1376028.ch1-vs-GSM1375986.ch1GSM1376029.ch1-vs-GSM1375986.ch1GSM1376030.ch1-vs-GSM1375986.ch1GSM1376031.ch1-vs-GSM1375986.ch1GSM1376032.ch1-vs-GSM1375986.ch1GSM1376033.ch1-vs-GSM1375986.ch1GSM1376034.ch1-vs-GSM1375986.ch1GSM1376035.ch1-vs-GSM1375986.ch1GSM1376036.ch1-vs-GSM1375986.ch1GSM1376037.ch1-vs-GSM1375986.ch1GSM1376038.ch1-vs-GSM1375986.ch1GSM1376039.ch1-vs-GSM1375986.ch1GSM1376040.ch1-vs-GSM1375986.ch1GSM1376041.ch1-vs-GSM1375986.ch1GSM1376042.ch1-vs-GSM1375986.ch1GSM1376043.ch1-vs-GSM1375986.ch1GSM1376044.ch1-vs-GSM1375986.ch1GSM1376045.ch1-vs-GSM1375986.ch1GSM1376046.ch1-vs-GSM1375986.ch1GSM1376047.ch1-vs-GSM1375986.ch1GSM1376048.ch1-vs-GSM1375986.ch1GSM1376049.ch1-vs-GSM1375986.ch1GSM1376050.ch1-vs-GSM1375986.ch1GSM1376051.ch1-vs-GSM1375986.ch1GSM1376052.ch1-vs-GSM1375986.ch1GSM1376053.ch1-vs-GSM1375986.ch1GSM1376054.ch1-vs-GSM1375986.ch1GSM1376055.ch1-vs-GSM1375986.ch1GSM1376056.ch1-vs-GSM1375986.ch1GSM1376057.ch1-vs-GSM1375986.ch1GSM1376058.ch1-vs-GSM1375986.ch1GSM1376059.ch1-vs-GSM1375986.ch1GSM1376060.ch1-vs-GSM1375986.ch1GSM1376061.ch1-vs-GSM1375986.ch1GSM1376062.ch1-vs-GSM1375986.ch1GSM1376063.ch1-vs-GSM1375986.ch1GSM1376064.ch1-vs-GSM1375986.ch1GSM1376065.ch1-vs-GSM1375986.ch1GSM1376066.ch1-vs-GSM1375986.ch1GSM1376067.ch1-vs-GSM1375986.ch1GSM1376068.ch1-vs-GSM1375986.ch1GSM1376069.ch1-vs-GSM1375986.ch1GSM1376070.ch1-vs-GSM1375986.ch1GSM1376071.ch1-vs-GSM1375986.ch1GSM1376072.ch1-vs-GSM1375986.ch1GSM1376073.ch1-vs-GSM1375986.ch1GSM1376074.ch1-vs-GSM1375986.ch1GSM1376075.ch1-vs-GSM1375986.ch1GSM1376076.ch1-vs-GSM1375986.ch1GSM1376077.ch1-vs-GSM1375986.ch1GSM1376078.ch1-vs-GSM1375986.ch1GSM1376079.ch1-vs-GSM1375986.ch1GSM1376080.ch1-vs-GSM1375986.ch1GSM1376081.ch1-vs-GSM1375986.ch1GSM1376082.ch1-vs-GSM1375986.ch1GSM1376083.ch1-vs-GSM1375986.ch1GSM1376084.ch1-vs-GSM1375986.ch1GSM1376085.ch1-vs-GSM1375986.ch1GSM1376086.ch1-vs-GSM1375986.ch1GSM1376087.ch1-vs-GSM1375986.ch1GSM1376088.ch1-vs-GSM1375986.ch1GSM1376089.ch1-vs-GSM1375986.ch1GSM1376090.ch1-vs-GSM1375986.ch1GSM1376091.ch1-vs-GSM1375986.ch1GSM1376092.ch1-vs-GSM1375986.ch1GSM1376093.ch1-vs-GSM1375986.ch1GSM1376094.ch1-vs-GSM1375986.ch1GSM1376095.ch1-vs-GSM1375986.ch1GSM1376096.ch1-vs-GSM1375986.ch1GSM1376097.ch1-vs-GSM1375986.ch1GSM1376098.ch1-vs-GSM1375986.ch1GSM1376099.ch1-vs-GSM1375986.ch1GSM1376100.ch1-vs-GSM1375986.ch1GSM1376101.ch1-vs-GSM1375986.ch1GSM1376102.ch1-vs-GSM1375986.ch1GSM1376103.ch1-vs-GSM1375986.ch1GSM1376104.ch1-vs-GSM1375986.ch1GSM1376105.ch1-vs-GSM1375986.ch1GSM1376106.ch1-vs-GSM1375986.ch1GSM1376107.ch1-vs-GSM1375986.ch1GSM1376108.ch1-vs-GSM1375986.ch1GSM1376109.ch1-vs-GSM1375986.ch1GSM1376110.ch1-vs-GSM1375986.ch1GSM1376111.ch1-vs-GSM1375986.ch1GSM1376112.ch1-vs-GSM1375986.ch1GSM1376113.ch1-vs-GSM1375986.ch1GSM1376114.ch1-vs-GSM1375986.ch1GSM1376115.ch1-vs-GSM1375986.ch1GSM1376116.ch1-vs-GSM1375986.ch1GSM1376117.ch1-vs-GSM1375986.ch1GSM1376118.ch1-vs-GSM1375986.ch1GSM1376119.ch1-vs-GSM1375986.ch1GSM1376120.ch1-vs-GSM1375986.ch1GSM1376121.ch1-vs-GSM1375986.ch1GSM1376122.ch1-vs-GSM1375986.ch1GSM1376123.ch1-vs-GSM1375986.ch1GSM1376124.ch1-vs-GSM1375986.ch1GSM1376125.ch1-vs-GSM1375986.ch1GSM1376126.ch1-vs-GSM1375986.ch1GSM1376127.ch1-vs-GSM1375986.ch1GSM1376128.ch1-vs-GSM1375986.ch1GSM1376129.ch1-vs-GSM1375986.ch1GSM1376130.ch1-vs-GSM1375986.ch1GSM1376131.ch1-vs-GSM1375986.ch1GSM1376132.ch1-vs-GSM1375986.ch1GSM1376133.ch1-vs-GSM1375986.ch1GSM1376134.ch1-vs-GSM1375986.ch1GSM1376135.ch1-vs-GSM1375986.ch1GSM1376136.ch1-vs-GSM1375986.ch1GSM1376137.ch1-vs-GSM1375986.ch1GSM1376138.ch1-vs-GSM1375986.ch1GSM1376139.ch1-vs-GSM1375986.ch1GSM1376140.ch1-vs-GSM137598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.ch1-vs-GSM684163.ch1GSM684494.ch1-vs-GSM684496.ch1GSM684495.ch1-vs-GSM684496.ch1GSM684497.ch1-vs-GSM684496.ch1GSM684498.ch1-vs-GSM684496.ch1GSM684499.ch1-vs-GSM684496.ch1GSM684500.ch1-vs-GSM684496.ch1GSM684501.ch1-vs-GSM684496.ch1GSM927630.ch1-vs-GSM927631.ch1GSM927632.ch1-vs-GSM927631.ch1GSM927633.ch1-vs-GSM927631.ch1GSM927634.ch1-vs-GSM927631.ch1GSM927635.ch1-vs-GSM927631.ch1GSM927636.ch1-vs-GSM927631.ch1GSM927637.ch1-vs-GSM927631.ch1GSM927638.ch1-vs-GSM927631.ch1GSM927639.ch1-vs-GSM927640.ch1GSM927640.ch1-vs-GSM927631.ch1GSM927641.ch1-vs-GSM927640.ch1GSM927642.ch1-vs-GSM927640.ch1GSM927643.ch1-vs-GSM927640.ch1GSM927644.ch1-vs-GSM927640.ch1GSM927645.ch1-vs-GSM927640.ch1GSM927646.ch1-vs-GSM927640.ch1GSM927647.ch1-vs-GSM927640.ch1GSM927648.ch1-vs-GSM927640.ch1GSM927649.ch1-vs-GSM927640.ch1GSM927650.ch1-vs-GSM927640.ch1GSM927651.ch1-vs-GSM927640.ch1GSM927652.ch1-vs-GSM927640.ch1GSM927653.ch1-vs-GSM927640.ch1GSM927654.ch1-vs-GSM927640.ch1GSM927655.ch1-vs-GSM927640.ch1GSM927656.ch1-vs-GSM927640.ch1GSM927657.ch1-vs-GSM927640.ch1GSM927658.ch1-vs-GSM927640.ch1GSM927659.ch1-vs-GSM927640.ch1GSM927660.ch1-vs-GSM927640.ch1GSM927661.ch1-vs-GSM927640.ch1GSM927662.ch1-vs-GSM927640.ch1GSM927663.ch1-vs-GSM927640.ch1GSM927664.ch1-vs-GSM927640.ch1GSM927665.ch1-vs-GSM927640.ch1GSM927666.ch1-vs-GSM927640.ch1GSM927667.ch1-vs-GSM927640.ch1GSESample_typeTest_statusRef_statusContrastGene

Above is a clustergram/heatmap visualization of your input matrix. The rows and columns have been hierarchically clustered, using the Scipy library in Python, using cosine distance and average linkage. Red/blue cells in the matrix represent positive/negative values in your matrix. The visualization interactive (zoomable, reorderable, filterable) and shareable - the current URL is permanent and shareable.

Column Similarity Matrix

Above is a similarity matrix of the columns in your input matrix. The cells in the matrix represent the similarity between columns, where red/blue represent positive/negative similarity (measured as 1 - cosine-distance). Similarity matrices offer a more detailed view of the similarities and differences between rows/columms, e.g. blue cells indicate data points that behave 'oppositely' and this can not be easily seen in a clustergram/heatmap view.

Row Similarity Matrix
CFTRCHRNA3CHRNA5FAM13AGATA2HHIPJUNJUNBJUNDMMP12MMP9MYH10PPARGSERPI..TGFBR3TNFCFTRCHRNA3CHRNA5FAM13AGATA2HHIPJUNJUNBJUNDMMP12MMP9MYH10PPARGSERPINA1TGFBR3TNFGeneGene

Above is a similarity matrix of the rows in your input matrix. The cells in the matrix represent the similarity between rows, where red/blue represent positive/negative similarity (measured as 1 - cosine-distance).